Installation

Dependencies

Kaptive requires the following software and libraries, if installing from source they will need to be installed and available in your path:

• Python >=3.9

• Biopython >=1.83

• minimap2

• DNA Features Viewer

Download and install Kaptive

From PyPI:

pip install kaptive

From Bioconda:

conda install -c bioconda kaptive

From source:

pip install git+https://github.com/klebgenomics/Kaptive.git